Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_29996_30098_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29996 - 30098

Intron Length:

103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTTAGTGGC

5'SS Class:

major

3'SS Sequence:

TCTGTTCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

CCTGACCGAGCC

Flanking Amino Acid:

SLRFLAWYFLDLKIQGETHD

Intron Amino Acid Position:

1121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.2

62.6

42.5

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

77.7

0.62

0.8

69.5

36.8

Minor 5ss

-2.4

2.9

28.3

Minor BPS

37.5

-0.9

44.73

43.1

Associated Gene:

Gene:

PAN2

Ensembl Gene ID:

ENSAPLG00000005195

Chromosome:

PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044260

16028 - 34465

18438

ENSAPLT00000005420

20162 - 34465

14304