Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_5106_5178_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5106 - 5178

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGCC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTGCAG

U12 Branch Point Sequence:

TGGCCCTGCAGC

Flanking Amino Acid:

LGLRPPASEQESFWRIPAAL

Intron Amino Acid Position:

994

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.9

33.4

Major BPS

40.6

-0.5

1.6

48.7

45.1

Major PPT

0.63

0.7

69.7

31.1

Minor 5ss

-2.9

3.3

32.7

42.5

Minor BPS

43.6

-0.5

2.1

53.46

43.8

Associated Gene:

Gene:

TIMELESS

Ensembl Gene ID:

ENSAPLG00000017164

Chromosome:

PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045375

257 - 6162

5906

ENSAPLT00000042913

257 - 6162

5906