Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_5333_5413_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5333 - 5413

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGATT

5'SS Class:

strong_major

3'SS Sequence:

GTGTGCCCAGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCGGAG

U12 Branch Point Sequence:

TGCCTCGGAGCC

Flanking Amino Acid:

PPRHPQAPAPAEQPPAPLGS

Intron Amino Acid Position:

1045

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

87.7

Major BPS

42.1

-0.4

1.6

40.4

42.3

Major PPT

62.6

0.28

56.2

Minor 5ss

32.8

-2

3.3

47.8

47.9

Minor BPS

39.7

-0.8

2.1

40.9

Associated Gene:

Gene:

TIMELESS

Ensembl Gene ID:

ENSAPLG00000017164

Chromosome:

PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045375

257 - 6162

5906