Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_5663_5815_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5663 - 5815

Intron Length:

153

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGCTCA

5'SS Class:

major

3'SS Sequence:

TCTCCCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

CATCCCTGACCC

Flanking Amino Acid:

DSEDEDGGSPGAEPAPPASP

Intron Amino Acid Position:

1114

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

64.6

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

75.5

0.57

0.7

69.5

24.3

Minor 5ss

37.3

-1.4

3.2

47.4

48.2

Minor BPS

50.7

1.8

62.14

42.7

Associated Gene:

Gene:

TIMELESS

Ensembl Gene ID:

ENSAPLG00000017164

Chromosome:

PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045375

257 - 6162

5906

ENSAPLT00000042913

257 - 6162

5906