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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_57461_57592_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57461 - 57592
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCGGTGAC
5'SS Class:
major
3'SS Sequence:
TTTCCTCATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATCC
Flanking Amino Acid:
HHAVHSGHLEMVNLLLNKGA
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
66.7
39.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
81.6
0.71
0.8
74.1
35.6
Minor 5ss
27
-2.6
3.2
34.3
42
Minor BPS
69
0.58
1.8
82.93
36.8

Associated Gene:

Gene:
ANKRD52
Ensembl Gene ID:
ENSAPLG00000016095
Chromosome:
PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016884
52190 - 69525
17336