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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_57964_58117_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57964 - 58117
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
GCTGCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
AATCCCCAAATC
Flanking Amino Acid:
VRHLLRLGVEIDEPNSFGNT
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
69.6
0.49
1
59.5
39
Major PPT
68.9
0.43
0.9
61.7
34.9
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
47.8
-0.1
1.9
60.49
38.4

Associated Gene:

Gene:
ANKRD52
Ensembl Gene ID:
ENSAPLG00000016095
Chromosome:
PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016884
52190 - 69525
17336