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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_59437_59521_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59437 - 59521
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GCCCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GCCCCCTGACCC
Flanking Amino Acid:
SDCCRKLLSSGQLYSIVSSL
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
67.8
0.4
0.8
61
29.2
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
47.4
-0.2
1.8
53.35
43.9

Associated Gene:

Gene:
ANKRD52
Ensembl Gene ID:
ENSAPLG00000016095
Chromosome:
PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016884
52190 - 69525
17336