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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_60664_61095_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60664 - 61095
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAG
U12 Branch Point Sequence:
GTGCCCCTAAGC
Flanking Amino Acid:
ADLRRRDKFGRTPLHYAAAN
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
76.2
39.9
Major BPS
48.3
-0.1
1.5
55.2
38.9
Major PPT
80.9
0.7
0.7
76.1
25.8
Minor 5ss
39.9
-1.1
3.4
55
49.2
Minor BPS
49
-0
2
61.56
43.2

Associated Gene:

Gene:
ANKRD52
Ensembl Gene ID:
ENSAPLG00000016095
Chromosome:
PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016884
52190 - 69525
17336