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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_61237_61343_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61237 - 61343
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCTGACCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GGCTCCTGACCT
Flanking Amino Acid:
HYAAASDTYRRAETHSGNSH
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
72.5
0.51
0.9
61.7
39.7
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
54.8
0.23
1.8
70.56
45.7

Associated Gene:

Gene:
ANKRD52
Ensembl Gene ID:
ENSAPLG00000016095
Chromosome:
PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016884
52190 - 69525
17336