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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_65799_66094_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65799 - 66094
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TCTTCTTTACGC
Flanking Amino Acid:
KIVNSRDAKGRTPLHAAAFA
Intron Amino Acid Position:
877

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
74
0.6
1
65.6
41.1
Major PPT
80.7
0.69
0.8
72.7
37.5
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
57.2
0.21
1.9
69.26
43

Associated Gene:

Gene:
ANKRD52
Ensembl Gene ID:
ENSAPLG00000016095
Chromosome:
PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016884
52190 - 69525
17336