Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_79655_79696_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

79655 - 79696

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGC|GTGCGGGTA

5'SS Class:

weak_major

3'SS Sequence:

TCCCCGTGTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAG

U12 Branch Point Sequence:

GTACCCTGAGCC

Flanking Amino Acid:

PGWHGATGRGAQGRHQETPG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.8

0.02

1.3

51.2

41.8

Major BPS

-0.1

1.5

42.6

40.4

Major PPT

0.43

60.3

40.4

Minor 5ss

27.2

-2.6

3.7

31.9

43.2

Minor BPS

51.8

0.04

1.7

63.35

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026416

Chromosome:

PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035542

77590 - 79774

2185