Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008106.1_1034_3389_F

Intron Information:

Intron Rank:

1662

Intron Class:

major

Intron Phase:

Intron Coordinates:

1034 - 3389

Intron Length:

2356

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTAAGTGCC

5'SS Class:

major

3'SS Sequence:

TTTGTCCCTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTAAAAT

U12 Branch Point Sequence:

TGTCCCTAAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.45

1.3

65.5

Major BPS

58.2

0.21

1.2

65.3

36.8

Major PPT

79.9

0.67

0.8

74.7

30.5

Minor 5ss

35.8

-1.6

3.2

49.6

39.8

Minor BPS

61.8

0.45

1.8

79.96

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001173

Chromosome:

PEDO01008106.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001158

21 - 4326

4306