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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008118.1_485_887_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
485 - 887
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCCTTTTCCACT
Flanking Amino Acid:
IDVAKVNTLIRPDGEKKAYV
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
65.9
40.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
79.4
0.66
0.8
71.7
34.1
Minor 5ss
24.4
-2.9
3.1
29.4
43.3
Minor BPS
48
-0
2
66.64
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025566
Chromosome:
PEDO01008118.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027251
21 - 3032
3012