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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008143.1_536_620_F

Intron Information:

Intron Rank:
135249
Intron Class:
major
Intron Phase:
Intron Coordinates:
536 - 620
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTACT
5'SS Class:
major
3'SS Sequence:
CCTCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAC
U12 Branch Point Sequence:
GGTCCCCCACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
73.4
37.1
Major BPS
47.2
-0.1
1
52.2
32.7
Major PPT
71.8
0.49
0.7
65.2
23.5
Minor 5ss
32
-2.1
2.9
40.1
40.7
Minor BPS
39.3
-0.8
2
48.5
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022766
Chromosome:
PEDO01008143.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048096
21 - 1466
1446