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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008154.1_2653_2735_R

Intron Information:

Intron Rank:
150561
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2653 - 2735
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-TC
5'SS Sequence:
TCC|GTGGGGTTC
5'SS Class:
weak_major
3'SS Sequence:
CTTGATGTTCCTC|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ACGTTCTTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.3
52.1
41.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
24.5
-1.4
4.2
49.8
47.7
Minor 5ss
36.3
-1.6
3.7
53.3
44.6
Minor BPS
58.2
0.11
1.3
55.3
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028499
Chromosome:
PEDO01008154.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033547
1202 - 2980
1779
ENSAPLT00000029548
21 - 2980
2960