Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008163.1_1342_1442_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1342 - 1442

Intron Length:

101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGTGTAGT

5'SS Class:

major

3'SS Sequence:

CTTTCTGTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGCCAT

U12 Branch Point Sequence:

CTTGCCTAACCT

Flanking Amino Acid:

GEEDADPGAMSRPFGVALLF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

0.9

72.3

38.6

Major BPS

62.2

0.3

1.4

72.5

43.5

Major PPT

85.3

0.79

0.8

80.2

31.8

Minor 5ss

38.2

-1.3

2.7

47.9

Minor BPS

52.4

0.15

2.1

47.8

Associated Gene:

Gene:

PSMA5

Ensembl Gene ID:

ENSAPLG00000021024

Chromosome:

PEDO01008163.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045658

185 - 2636

2452