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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008186.1_3765_4354_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3765 - 4354
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTGC
5'SS Class:
major
3'SS Sequence:
CGTTGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTTTCTTCATT
Flanking Amino Acid:
KNITKGKTSTGSTTSATNSP
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
59.8
40
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.7
0.6
0.9
69.7
36.7
Minor 5ss
42.5
-0.8
3.2
58.8
46.1
Minor BPS
68.7
0.67
1.7
85.57
35

Associated Gene:

Gene:
GATA5
Ensembl Gene ID:
ENSAPLG00000015144
Chromosome:
PEDO01008186.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015791
2454 - 14610
12157