Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_114958_117377_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

114958 - 117377

Intron Length:

2420

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTATT

5'SS Class:

major

3'SS Sequence:

TTCTACCATATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

TTACCTTCAAAC

Flanking Amino Acid:

LGYSCICGNAGMGLSVQLTA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

1.1

84.7

32.4

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

71.8

0.49

0.9

66.3

34.6

Minor 5ss

44.1

-0.6

2.5

60.5

43.9

Minor BPS

55.3

0.15

1.6

66.75

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019282

Chromosome:

PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036320

114596 - 125697

11102

ENSAPLT00000033220

114596 - 125697

11102