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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_124316_124604_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124316 - 124604
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTAAATTAACC
Flanking Amino Acid:
EKIDKARIELEFWKARSNAV
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.1
37.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.8
0.9
0.7
84.5
30.1
Minor 5ss
33.7
-1.9
2.8
31.8
42.6
Minor BPS
56.7
0.19
1.9
69.68
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019282
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036320
114596 - 125697
11102