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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_14515_14602_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14515 - 14602
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCCCA
5'SS Class:
major
3'SS Sequence:
GGGGTGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CACCCTACAACT
Flanking Amino Acid:
HVEDASVECSDSRTSELGTL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
55.3
43.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
66
0.36
1.1
57.5
47.4
Minor 5ss
36.8
-1.5
3.2
48.7
46.9
Minor BPS
45.8
-0.2
1.8
59.78
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010096
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041644
11701 - 73341
61641
ENSAPLT00000024211
11701 - 71849
60149
ENSAPLT00000010517
11701 - 26150
14450
ENSAPLT00000045308
11701 - 73341
61641