About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_14933_15764_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14933 - 15764
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCCTGTTTATTG
Flanking Amino Acid:
HGEDAGVVCSASGVSISAEL
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.6
0.73
0.9
77.5
35.5
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
46
-0.4
2
49.81
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010096
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045308
11701 - 73341
61641
ENSAPLT00000041644
11701 - 73341
61641
ENSAPLT00000024211
11701 - 71849
60149
ENSAPLT00000010517
11701 - 26150
14450