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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_16810_17344_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16810 - 17344
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TGGATGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAC
U12 Branch Point Sequence:
GGATGTATAACT
Flanking Amino Acid:
HGEDAGVVCSDALIPEPARL
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
60.2
0.25
1.3
64
39.8
Major PPT
72.6
0.51
1
65.3
45.4
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
48.5
-0
2
67.48
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010096
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041644
11701 - 73341
61641
ENSAPLT00000024211
11701 - 71849
60149
ENSAPLT00000010517
11701 - 26150
14450
ENSAPLT00000045308
11701 - 73341
61641