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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_175860_177062_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
175860 - 177062
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
AATTCCATTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCATCCTTACTG
Flanking Amino Acid:
QEAVTHLDVTALGNKPTLER
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
70.6
0.46
0.9
63.4
37.2
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
62.2
0.24
1.7
63.75
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019915
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033964
174261 - 260418
86158
ENSAPLT00000028460
174261 - 260418
86158
ENSAPLT00000025319
174261 - 202168
27908
ENSAPLT00000018901
174261 - 260418
86158
ENSAPLT00000038662
174261 - 260418
86158