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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_177327_177584_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
177327 - 177584
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
GCCTCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAG
U12 Branch Point Sequence:
TTGTGCCCAATT
Flanking Amino Acid:
TLVKEKISRTGSLNGMILKK
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
59.4
0.23
1.5
69.4
37.7
Major PPT
74.6
0.55
0.9
68.1
37.5
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
47.6
-0.1
2.2
72.8
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019915
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033964
174261 - 260418
86158
ENSAPLT00000025319
174261 - 202168
27908
ENSAPLT00000018901
174261 - 260418
86158
ENSAPLT00000038662
174261 - 260418
86158