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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_177327_180629_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
177327 - 180629
Intron Length:
3303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
CTCCATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
TLVKEKISRTENCDWFWILY
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.7
0.69
0.8
72.1
37.6
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019915
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028460
174261 - 260418
86158