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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_177846_180629_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
177846 - 180629
Intron Length:
2784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCCATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
ESSLHVAQQSENCDWFWILY
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.7
0.69
0.8
72.1
37.6
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019915
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033964
174261 - 260418
86158
ENSAPLT00000025319
174261 - 202168
27908
ENSAPLT00000018901
174261 - 260418
86158
ENSAPLT00000038662
174261 - 260418
86158