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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_180690_181521_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
180690 - 181521
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTGTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATTCTGTCATG
Flanking Amino Acid:
FFCLLLLILIAFVLQIFKYI
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
75.1
0.56
0.9
72.5
37.7
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
46.4
-0.4
2.4
59.68
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019915
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033964
174261 - 260418
86158
ENSAPLT00000028460
174261 - 260418
86158
ENSAPLT00000025319
174261 - 202168
27908
ENSAPLT00000018901
174261 - 260418
86158
ENSAPLT00000038662
174261 - 260418
86158