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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_181576_182414_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
181576 - 182414
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
TTCTCCCCACCT
Flanking Amino Acid:
YIIWNPFIDTKELQEQGRVH
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
85.1
0.79
0.8
80.2
31.8
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
49.7
0.06
2.2
76.96
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019915
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018901
174261 - 260418
86158
ENSAPLT00000038662
174261 - 260418
86158
ENSAPLT00000033964
174261 - 260418
86158
ENSAPLT00000028460
174261 - 260418
86158
ENSAPLT00000025319
174261 - 202168
27908