About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_190295_194024_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
190295 - 194024
Intron Length:
3730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAC
U12 Branch Point Sequence:
ACTTTCCCAGTG
Flanking Amino Acid:
ENLLEIDNKLGRTMDRNTAR
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
66.1
0.4
1.2
69.1
37.9
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
41.5
-0.7
2
46.18
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019915
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028460
174261 - 260418
86158
ENSAPLT00000025319
174261 - 202168
27908
ENSAPLT00000018901
174261 - 260418
86158
ENSAPLT00000038662
174261 - 260418
86158
ENSAPLT00000033964
174261 - 260418
86158