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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_194364_195897_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194364 - 195897
Intron Length:
1534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGCAAT
U12 Branch Point Sequence:
CAATGTCCAGTT
Flanking Amino Acid:
ETLLEIDNKLGRTMDRETMR
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
48.1
-0.1
1.3
54.5
39.1
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
35.1
-1
2
46.62
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019915
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028460
174261 - 260418
86158
ENSAPLT00000025319
174261 - 202168
27908
ENSAPLT00000018901
174261 - 260418
86158
ENSAPLT00000033964
174261 - 260418
86158