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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_194364_256740_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194364 - 256740
Intron Length:
62377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCAGTT
Flanking Amino Acid:
ETLLEIDNKLEELQAQGRVQ
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
80.4
0.68
0.9
73.8
40.8
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
68.5
0.66
1.8
88.5
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019915
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038662
174261 - 260418
86158