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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_22566_23266_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22566 - 23266
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
ATTGTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TTACCCCTGATT
Flanking Amino Acid:
HREDASVVCSEPDTSKSSLL
Intron Amino Acid Position:
1135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
81
0.7
0.9
77.4
41.2
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
60
0.4
1.7
78.57
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010096
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010517
11701 - 26150
14450