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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_23597_24406_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23597 - 24406
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCACGTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTTTTCTCACCA
Flanking Amino Acid:
HGEDAGVVCSVLSNAGIANR
Intron Amino Acid Position:
1245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.7
0.56
0.9
68.1
37.3
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
57.5
0.23
1.8
72
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010096
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010517
11701 - 26150
14450