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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_256987_258333_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
256987 - 258333
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ACATCCTTTACA
Flanking Amino Acid:
AEKESLKKENELLRVQRYKV
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.4
0.77
0.8
80.2
32
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
66.6
0.52
1.6
70.49
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019915
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038662
174261 - 260418
86158
ENSAPLT00000033964
174261 - 260418
86158
ENSAPLT00000028460
174261 - 260418
86158