About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_272985_275418_F

Intron Information:

Intron Rank:
129270
Intron Class:
major
Intron Phase:
Intron Coordinates:
272985 - 275418
Intron Length:
2434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAG
U12 Branch Point Sequence:
ATCTCAGCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
62.2
0.3
1.5
71.4
36.6
Major PPT
85.2
0.79
0.8
80.7
31.3
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
45
-0.3
2.3
67.66
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019542
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043714
267043 - 278498
11456
ENSAPLT00000024973
267043 - 278498
11456
ENSAPLT00000020966
267043 - 278498
11456