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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_275524_275924_F

Intron Information:

Intron Rank:
129271
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
275524 - 275924
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
ACATTATGCTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
53.5
0.08
1.1
57
42
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
69.5
0.7
1.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019542
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043714
267043 - 278498
11456
ENSAPLT00000024973
267043 - 278498
11456
ENSAPLT00000020966
267043 - 278498
11456