Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_276220_276433_F

Intron Information:

Intron Rank:

129273

Intron Class:

major

Intron Phase:

Intron Coordinates:

276220 - 276433

Intron Length:

214

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGGAGT

5'SS Class:

major

3'SS Sequence:

TACTCTCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATGAA

U12 Branch Point Sequence:

ACCTCCTTCACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

0.9

71.3

40.1

Major BPS

55.3

0.13

1.1

47.4

Major PPT

82.7

0.74

0.8

31.2

Minor 5ss

28.7

-2.4

3.2

36.5

42.7

Minor BPS

63.7

0.41

1.8

68.2

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019542

Chromosome:

PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043714

267043 - 278498

11456

ENSAPLT00000020966

267043 - 278498

11456