About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_314368_314886_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
314368 - 314886
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCTCACTGGATT
Flanking Amino Acid:
LDFWEARSHAVFIDVNPDCR
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76.1
35
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
89.3
0.88
0.6
81.8
30.2
Minor 5ss
33.6
-1.9
2.9
41.3
45
Minor BPS
47.7
-0.1
1.7
63.25
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010865
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047359
313990 - 326160
12171
ENSAPLT00000044399
313990 - 326160
12171
ENSAPLT00000011304
313990 - 326160
12171