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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_314914_316052_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
314914 - 316052
Intron Length:
1139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGTCTCTTACCT
Flanking Amino Acid:
DHFGQLKAELDFWEARSHAV
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82
0.72
0.8
76.8
31.5
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
66
0.58
1.6
81.89
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010865
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011304
313990 - 326160
12171
ENSAPLT00000047359
313990 - 326160
12171
ENSAPLT00000044399
313990 - 326160
12171