Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_316074_318072_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

316074 - 318072

Intron Length:

1999

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATCTA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAAAAAT

U12 Branch Point Sequence:

GTGACAGGAATA

Flanking Amino Acid:

LEQEKSTNRRGQLKAELDFW

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

80.4

34.2

Major BPS

0.1

59.7

32.6

Major PPT

89.5

0.89

0.6

81.6

30.4

Minor 5ss

37.2

-1.5

3.1

49.8

46.4

Minor BPS

40.5

-0.7

2.2

51.1

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010865

Chromosome:

PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047359

313990 - 326160

12171