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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_318100_318580_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
318100 - 318580
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CTGAACTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
EENEQLKSMLEQEKSTNRRA
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
61.6
0.26
1
58.3
42.7
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010865
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047359
313990 - 326160
12171
ENSAPLT00000044399
313990 - 326160
12171
ENSAPLT00000011304
313990 - 326160
12171