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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_320304_320665_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
320304 - 320665
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
GTTTTGTTAACC
Flanking Amino Acid:
LISTVFCKLRSNHKKTIKSV
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
76.5
0.6
1
71.1
43.4
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
66
0.48
2
78.59
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010865
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047359
313990 - 326160
12171
ENSAPLT00000044399
313990 - 326160
12171