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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_320765_322158_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
320765 - 322158
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTCATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCATTTTTACAG
Flanking Amino Acid:
TTRESRIQISEIFFPSISKW
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
81.8
0.72
0.9
75.6
38.2
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
48.2
-0.2
1.7
52.29
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010865
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047359
313990 - 326160
12171
ENSAPLT00000044399
313990 - 326160
12171
ENSAPLT00000011304
313990 - 326160
12171