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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_322444_323573_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
322444 - 323573
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGGC
5'SS Class:
major
3'SS Sequence:
GTTTTTTCCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AGTGTTTGAAAT
Flanking Amino Acid:
HDVLIELKVAAKGSVPSISL
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.3
72.7
38.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
81.9
0.72
0.7
81.5
30.5
Minor 5ss
28.4
-2.5
3
35.8
40.9
Minor BPS
48.7
-0
1.6
64.78
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010865
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011304
313990 - 326160
12171
ENSAPLT00000047359
313990 - 326160
12171
ENSAPLT00000044399
313990 - 326160
12171