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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_337950_338821_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
337950 - 338821
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTGGAG
U12 Branch Point Sequence:
CTTTGTTGGAGT
Flanking Amino Acid:
DEVVVDLNVAAKGDDTSIFL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
42
-0.5
1.8
42.8
49.4
Major PPT
74.7
0.56
0.9
68.8
37.3
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
45.3
-0.2
2.2
66.95
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027253
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021758
337841 - 339229
1389