Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_34406_34582_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

34406 - 34582

Intron Length:

177

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ACA|GCCAGGTAG

5'SS Class:

weak_major

3'SS Sequence:

GATCACCAGGTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGATCAC

U12 Branch Point Sequence:

CGCTCGTGGATC

Flanking Amino Acid:

VSPVCTFSCTDDCLKAFPQV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.6

0.09

1.4

44.8

43.5

Major BPS

48.2

-0.1

1.3

51.4

43.9

Major PPT

49.9

-0

44.5

37.3

Minor 5ss

23.4

-3.1

3.9

34.8

42.3

Minor BPS

43.6

-0.5

2.1

50.45

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022654

Chromosome:

PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045613

32582 - 35362

2781