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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_36029_38577_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
36029 - 38577
Intron Length:
2549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTGATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
CCTTCCTGATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
81.8
0.72
0.9
76.4
37.5
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
56.5
0.28
1.8
72.32
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025847
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047397
34291 - 38677
4387