Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_383100_383216_R

Intron Information:

Intron Rank:

150481

Intron Class:

major

Intron Phase:

Intron Coordinates:

383100 - 383216

Intron Length:

117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTCGT

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCCCTAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAGTAAC

U12 Branch Point Sequence:

TTCCCCCTAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.8

43.8

Major BPS

57.9

0.2

1.1

59.4

34.8

Major PPT

72.1

0.5

71.8

26.8

Minor 5ss

30.1

-2.3

2.9

41.8

Minor BPS

53.6

-0

1.9

63.25

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028451

Chromosome:

PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033155

382031 - 405929

23899

ENSAPLT00000018386

382031 - 405929

23899