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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_384084_402678_R

Intron Information:

Intron Rank:
150492
Intron Class:
major
Intron Phase:
Intron Coordinates:
384084 - 402678
Intron Length:
18595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CATTCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTCCAT
U12 Branch Point Sequence:
CATCCCAGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
68.5
0.46
1.2
78.5
35.1
Major PPT
79.2
0.66
0.8
69.9
36.2
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
50.7
0
1.8
63.57
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028451
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033155
382031 - 405929
23899