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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008204.1_403077_403263_R

Intron Information:

Intron Rank:
150485
Intron Class:
major
Intron Phase:
Intron Coordinates:
403077 - 403263
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAC
U12 Branch Point Sequence:
CTGCCCTCACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
59
0.22
1
66.7
30
Major PPT
77.1
0.61
0.7
69.1
31.5
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
45
-0.4
1.9
53.28
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028451
Chromosome:
PEDO01008204.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033695
402153 - 405929
3777
ENSAPLT00000033155
382031 - 405929
23899
ENSAPLT00000018386
382031 - 405929
23899
ENSAPLT00000038620
402153 - 405929
3777